AI-mediated analysis of vaccinated patients affirms safety of SARS-CoV-2 vaccines

As newly developed vaccines against coronavirus disease 2019 (COVID-19) are being rolled out worldwide, several regions have seen the rise of vaccine hesitancy or unwillingness. This is to a large extent fuelled by fears about the potentially serious adverse effects of the vaccines.

A new preprint on the medRxiv* server provides a timely answer to many of these fears, by reporting on the results of an analysis of over 31,000 vaccine recipients with respect to immediate adverse effects, reported within 21 days, of the first and/or second doses of the vaccine.

Study: Real-time analysis of a mass vaccination effort via an Artificial Intelligence platform confirms the safety of FDA-authorized COVID-19 vaccines. Image Credit: M-Foto / Shutterstock

Vaccine-associated adverse effects

The first two vaccines to enter the arena were the BNT162b2 (Pfizer/BioNTech) and mRNA-(Moderna) COVID-19 vaccines. Both received Emergency Use Authorizations by the Food and Drug Administration (FDA), and the phase III trials showed that they were effective and safe, with efficacies hovering around 95%.

Local adverse effects reported in phase III trials included pain, redness, and/or swelling at the site of injection, with the first being by far the most common. Systemic reactions included headache, fatigue, muscle pain, joint pain, fever with chills, and nausea or vomiting.

Real-time AI-driven analysis

The need to evaluate the real-time safety and efficacy of these vaccines in the broad world population drove the current study. The method they chose was the analysis of patient information derived from electronic health record (EHR) systems.

Earlier, these researchers had set up an algorithm to select and categorize patient data from HER, in order to obtain a cohort of vaccinated patients tested for COVID-19 by polymerase chain reaction (PCR) with clinically-matched unvaccinated controls.

This was used in the current study to acquire information on real-world vaccine safety in over 31,000 patients who were vaccinated through the Mayo Clinic and its associated centers.

The differences in evaluating vaccine-associated adverse effects in and outside a clinical trial vary in the number and types of adverse effects reported. In the first setting, volunteers were encouraged to report any adverse effect, while in the second, only those effects that are tolerably severe are likely to be reported to the physician, as the patient must take an additional effort to book a consultation in such a case.

The study matches the vaccine recipients to matched controls, helping to adjust the adverse effects reported in terms of context and other factors.

No increase in clinic visits

The study found that there was no unexpected spike in clinic or physician visits following vaccination at 7, 14 or 21 days from the first or second dose. At seven days, about 20% of vaccinated individuals had been seen at least once by a physician, comparable to unvaccinated individuals. The same applies at later time points.

With the second dose, too, about 14% to 16% had been seen by a physician, in both cohorts, within 7 days, and the same pattern was repeated at 14 and 21 days. These patterns indicate that the vaccines are tolerable in the general population.

No increase in adverse event reporting

The rates at which vaccine-associated adverse effects were reported did not rise above the occurrence of such symptoms in unvaccinated controls. They were found to be much lower than reported during clinical trials, as expected. In real life, those reported to healthcare following a vaccine dose are adverse effects that are either severe or persistent enough to prompt a return to the clinic or other medical center.

The symptoms most often reported included headache, muscle pain, joint pain and tiredness, and were equally reported within a week of the first dose, as well as of the second dose (whether this was actually taken or assigned).

Serious adverse effects such as anaphylaxis and facial palsy were also comparably reported in this time period for both cohorts. Some symptoms, like fever, diarrhea and lymph node enlargement, were less frequent in the vaccinated cohort, in fact, at all three time points.

Schematic illustration of participant selection and study design. The vaccinated cohort is composed 31,069 individuals from the Mayo Clinic and associated health systems who received at least one dose of BNT162b2 (Pfizer/BioNTech) or mRNA-1273 (Moderna) between December 1, 2020 and February 8, 2021 and did not test positive for SARS-CoV-2 prior to their first vaccination. A control cohort of unvaccinated individuals was generated via 1:1 propensity score matching, yielding 31,069 individuals with similar distributions of age, sex, race, ethnicity, residential location, and number of prior SARS-CoV-2 PCR tests in the past year. For each cohort, the incidence rates of several adverse effects (e.g., arthralgia) were calculated for the seven days following the first dose and, separately, for the seven days following the second dose. For a given adverse effect, the incidence rate ratio (and the corresponding 95% CI) was calculated to determine whether one cohort was more likely to experience the event than the other. Incidence rates and incidence rate ratios were also calculated for the 14 and 21 days following each vaccine dose.

What are the implications?

The low rates of reported symptoms are attributed to their mildness, in most cases, as well as to the fact that healthcare practitioners are likely to make up a large part of the vaccinated group due to their prioritization during the vaccination campaign. As such, being familiar with the expected adverse effects, they are less likely to report them unless unexpectedly or intolerably severe.

This does not apply to serious issues, including anaphylaxis, which are more likely to be documented because of the need for emergency care. These were also not more frequently reported in the study.

Our method should identify the symptoms and phenotypes that represent the most serious threats to vaccine safety and tolerability of practical significance. Indeed, this is the central reason why our analysis should be viewed as complementary to the data which has been obtained in the more controlled setting of clinical trials.”

The researchers conclude that their findings support the safety and tolerability of both the Pfizer and Moderna vaccines, providing a better foundation for their rapid and broad-based distribution.

*Important Notice

medRxiv publishes preliminary scientific reports that are not peer-reviewed and, therefore, should not be regarded as conclusive, guide clinical practice/health-related behavior, or treated as established information.

Journal reference:
  • McMurry, R. et al. (2021). Real-time analysis of a mass vaccination effort via an Artificial Intelligence platform confirms the safety of FDA-authorized COVID-19 vaccines. medRxiv preprint doi:,

Posted in: Device / Technology News | Medical Science News | Medical Research News | Disease/Infection News | Healthcare News

Tags: Anaphylaxis, Artificial Intelligence, Clinical Trial, Consultation, Coronavirus, Coronavirus Disease COVID-19, Diarrhea, Efficacy, Electronic Health Record, Facial Palsy, Fatigue, Fever, Headache, Healthcare, Joint Pain, Lymph Node, Machine Learning, Muscle, Nausea, Pain, Polymerase, Polymerase Chain Reaction, SARS, SARS-CoV-2, Tiredness, Vaccine, Vomiting

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Written by

Dr. Liji Thomas

Dr. Liji Thomas is an OB-GYN, who graduated from the Government Medical College, University of Calicut, Kerala, in 2001. Liji practiced as a full-time consultant in obstetrics/gynecology in a private hospital for a few years following her graduation. She has counseled hundreds of patients facing issues from pregnancy-related problems and infertility, and has been in charge of over 2,000 deliveries, striving always to achieve a normal delivery rather than operative.

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